PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g21340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 247aa    MW: 28103.3 Da    PI: 7.2967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g21340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-0585107123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C++C ++F+++  L  H++ H
  CA10g21340  85 YECHYCYRCFPTSQALGGHQNAH 107
                 99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.44E-683112No hitNo description
PROSITE profilePS5015711.17785112IPR007087Zinc finger, C2H2
PfamPF139121.5E-585109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MERIERESLH FKNVDTFSQL PITRPVKEKP IRLFGKDFVD GGDSTNTVTT TNMSETIDSN  60
PIFHNGLETN TISRMDKNIE VNRKYECHYC YRCFPTSQAL GGHQNAHKKE RQNDKLAHVQ  120
SSIVHEKNVY AITNRHRLGE AAPRIHHQHS TWANNISTTP PRFYGNVHDH VNVINPINGS  180
DQLGFWKITP TVHHNNSSTS CSNLGFSNDD LIRTSPMVKI STNCEDNFMY EPKGEVQDHV  240
SLDLHL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554929.10.0PREDICTED: zinc finger protein GIS-like
TrEMBLM1ATE81e-104M1ATE8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000297971e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.13e-31C2H2 family protein